I have a question and cost break down for my 7 days holiday in japan use JR pass

I go to japan from 7-15 Oktober 2015 this is my itenary. i want to know where travel that i go is cover by JR pass or not

what train must i take because i dont have idea what train/bus or anything else that must i take

7-oktober-2015 Osaka - Kyoto

Landing at 8AM in Kansai International Airport

1. Kansai Airport to Osaka Castel
2. Osaka Castel to Universal studio or Dotonbori.
   i just want to take picture in front of the universal studio. which one i must go first?
   3.Osaka Castel to Universal studio or Dotonbori.
   i just want to take picture in front of the universal studio. which one its better?
3. Osaka To Kyoto (Prefer By Shinkansen)
4. Sleep in Kyoto
   What hotel for backpacker. need cheap and clean room for 3 Persons

8-oktober-2015 Kyoto
1. Kyoto to Arashiyama
What Train Or Bus??
2. Arashiyama to Fushimi Inari Shrine
What Train Or Bus??
3. Fushimi Inari Shrine to Yasaka shrine
What Train Or Bus??
4. Fushimi Inari to Kiyomizu temple
What Train Or Bus??

9-Oktober-2015 Kyoto - Gifu - Takayama - Shirakawa Go - Kanazawa
1. Kyoto to Gifu (Prefer By Shinkansen) Which Train??
2. Gifu to Takayama (Prefer By Shinkansen) Which Train??
In Takayama i want to visit sanno machi street and hida-takayama old village
3. Takayama to Shirakawa go
What Train Or Bus??
4. Shirakawa go to Kanazawa
What Train Or Bus??
Sleep In Kanazawa What hotel for backpacker. need cheap and clean room for 3 Persons

10-Oktober-2015 Kanazawa
1. Kanazawa to Toyama (Prefer By Shinkansen) Which Train??
2. Toyama to Alpine Route
if not cover by Jr What must i do for get cheap price
3. Alpine route to Matsumoto
What Train Or Bus??
Want to see matsumoto castle. Sleep In Matsumoto What hotel for backpacker. need cheap and clean room for 3 Persons

11-Oktober-2015 Matsumoto - MT.Fuji - Gotemba - Lake Kawaguchi
1. Matsumoto to MT.Fuji (Prefer By Shinkansen) Which Train??
2. MT Fuji to Gotemba Premium Outlet
What Train Or Bus??
3. Gotemba Premium Outlet to Lake Kawaguchi (Prefer By Shinkansen) Which Train??
Sleep In Matsumoto What hotel for backpacker. need cheap and clean room for 3 Persons

12-Oktober-2015 Lake Kawaguchi - Yokohama - Tokyo
1. Lake Kawaguchi to Yokohama (Prefer By Shinkansen) Which Train??
2. Yokohama to China Town in yokohama or Yamashita Park
3. Yokohama to Tokyo (Prefer By Shinkansen) Which Train??

13-Oktober-2015 See around Tokyo

14-Oktober-2015 Tokyo - Haneda Airport My Flight at 23.50 PM
what must i buy JR Pass in tokyo only looking around for 1 Day
1. Tokyo to Haneda Aiport Which Train?